I am running Jaikoz v2.4.0 Beta 3 on OS X 10.4 and I am looking for the setting reference in online/offline manual (noted below)
3.3. Save and Move
Save and Move saves any changes and then moves the selected files to the specified folder, this is an easy way to move a set of processed files to another folder. By default it will create the subfolder hierachy underneath the selected folder using the values in the subfolder fields for the selected files, but you can move the files without creating the subfolder hierachy by unchecking the Create subfolders hierachy option